BICAN Specimen Portal

Donor 0/0 selected

Local Donor ID	NHash Donor ID	Repository	Donor Source
Ethnicity	Race	Second Race	Sex at Birth
Gender at Time of Death	Sexual Orientation at Time of Death	Age Value (Years)	Birth Country Name
Primary Language Code	Secondary Language Code	Date of Death	Autopsy Report
Cause of Death	Cause of Death Code	Manner of Death	Marital Or Partner Status ATOD
Education Years Number	Family Income Range	Informant Questionnaire Completed	Informant Interview Performed
Informant Relationship	Informant Relationship Specify	Handedness	Medical Records Available
Medical Records Reviewed	HBCAC Confirmation Status	Age at Death Value	Age at Death Unit
Age at Death Reference Point	Age at Death Description	Donor Species	Hemisphere
Post Mortem Interval	Left Hemisphere Preparation	Left Hemisphere Preparation Specify	Right Hemisphere Preparation
Right Hemisphere Preparation Specify	RIN	RIN Tissue Source	RINe
RINe Tissue Source	pH	Brain Weight Measurement	Brain Tissue Weighed Type
Photo 2d Available	Scan 3d Available	Antemortem MRI Available	Postmortem MRI Available
Postmortem MRI Type	Non-Brain Tissue Available	Clinical Brain Diagnosis Available	Clinical Brain Diagnosis Code
Clinical Brain Diagnosis Confidence Level	Genetic Diagnosis Available	Genetic Diagnosis Code	Genetic Diagnosis Confidence Level
Non-Brain Diagnosis Available	Non-Brain Diagnosis Code	Non-Brain Diagnosis Confidence Level	Birth Weight Value (Lbs)
Birth Weight Value (Oz)	Gestational Age Value (Weeks)	Gestational Age Value (Days)	Apgar Five Minute Score Available
Apgar Five Minute Score	Apgar Ten Minute Score Available	Apgar Ten Minute Score	Perinatal Neurologic Event Type
Perinatal Neurologic Event Type Specify	Relative Type	Relative Type Specify	Condition Type
Condition Type Specify	Test Name	Result	Testing Tissue Source
Drugs Found	Drugs Found Specify	Neuropathology Diagnosis Available	Neuropathology Diagnosis ICD-10 Codes
Artifacts	Artifacts Type	Artifacts Type Specify	Developmental
Developmental Type Specify	Inflammatory	Inflammatory Type Specify	Infectious
Infectious Type Specify	Traumatic	Traumatic Type	Traumatic Type Specify
Vascular	Vascular Type	Vascular Type Specify	Neoplastic
Neoplastic Type	Neoplastic Type Specify	Aging	Aging Type
Aging Type Specify	Neurodegenerative	Neurodegenerative Type	Neurodegenerative Type Specify
Consent Status	The Indicator of Serology Test Positivity	Left Hemisphere Preparation (Second Method)	Right Hemisphere Preparation (Second Method)
Access Level	Data Use Limitation	Disease Specification	IRB Approval Required
Publication Required	Collaboration Required	Not-for-profit Use Only	Methods
Genetic Study Only	Genomic Summary Results (GSR) Controlled Access	Donor IC Forms	Donor Project
Donor Labs	Donor IC Cohort Tags	Cause Of Death Data Availability	Rin Data Availability
Rine Data Availability	Notes Related To Hbcac Processing	Non-Brain Specimen Data Availability	Neurologic Events Data Availability
Family History Records Availability	Infectious Testing Data Availability	Toxicology Screening Data Availability	Neurologic And/Or Neuropathologic Diagnoses Data Availability
Label Of Neuropathologic Diagnosis	Age of Death

Slab 0/0 selected

ROI 0/0 selected

ROI NHash ID	ROI Local Name	ROI Type	ROI Atlas Structure
Mapped NBB Brain Regions

Tissue 0/0 selected

Section 0/0 selected

Dissociated Cell Sample 0/0 selected

Dissociated Cell Sample Local Name / Identifier	Dissociated Cell Sample NHash ID	Dissociated Cell Sample Cell Label Barcode	Cell Prep Type
Dissociated Cell Sample Preparation Date	Patched Cell Structure	Dissociated Cell Sample Project	Dissociated Cell Sample Lab
Upstream Section Local Name

Enriched Cell Sample 0/0 selected

Barcoded Cell Sample 0/0 selected

Amplified cDNA 0/0 selected

Library 0/0 selected

Library Aliquot 0/0 selected

Library Pool 0/0 selected

Local Slab ID	NHash Slab ID	Width	Height
Pixels Per Mm	Slab Project	Slab Brain Subdivision	Slab Thickness
Slab Visible Slab Face	Upstream Donor Database ID for Slab	Slab Hemisphere

Local Tissue Name	Tissue NHash ID	Tissue Preparation Date	Species That the Tissue Belongs To
Tissue Sample Structure	Brain Subdivision the Tissue Belongs To	Brain Hemisphere the Tissue Belongs To	Tissue Sample Type
Tissue Structure Acronym	Tissue Project	Tissue Lab	Donor Stage
Tissue Structure Code	Upstream Tissue Sample Local Name for Tissue

Upstream Tissue Sample Local Name	Section Local Name/Identifier	Section Ordinal	Section Thickness
Section Barcode	Plane of Section	Section Usage	Section NHash ID
Section Project	Section Lab

Enriched Cell Sample Local Name / Identifier	Enriched Cell Sample NHash ID	Enriched Cell Sample Cell Label Barcode	Enriched Cell Sample Preparation Date
Enrichment Population	Histone Modification Marker	Enriched Cell Sample Database ID	Enriched Cell Sample Project
Enriched Cell Sample Lab	Upstream Dissociated Cell Sample NHash IDs in Enriched Cell Sample

Barcoded Cell Sample Local Name / Identifier	Barcoded Cell Sample NHash ID	Barcoded Cell Sample Number of Expected Cells	Barcoded Cell Sample Preparation Date
Barcoded Cell Sample Port Well	Barcoded Cell Input Quantity Count	Barcoded Cell Sample Technique	Barcoded Cell Sample Tag
Barcoded Cell Barcode Set	Barcoded Cell Sample Project	Barcoded Cell Sample Lab	Barcoded Cell Sample QC Number of Reads
Barcoded Cell Sample QC Sequencing Saturation	Barcoded Cell Sample QC Fraction of Unique Reads Mapped to Genome	Barcoded Cell Sample QC Fraction of Unique and Multiple Reads Mapped to Genome	Barcoded Cell Sample QC Fraction of Reads with Q30 Bases in RNA
Barcoded Cell Sample QC Fraction of Reads with Q30 Bases in cb And umi	Barcoded Cell Sample QC Fraction of Reads with Valid Barcodes	Barcoded Cell Sample QC Reads Mapped Antisense to Gene	Barcoded Cell Sample QC Reads Mapped Confidently Exonic
Barcoded Cell Sample QC Reads Mapped Confidently to Genome	Barcoded Cell Sample QC Reads Mapped Confidently to Intronic Regions	Barcoded Cell Sample QC Reads Mapped Confidently to Transcriptome	Barcoded Cell Sample QC Estimated Cells
Barcoded Cell Sample QC umis in Cells	Barcoded Cell Sample QC Mean umi Per Cell	Barcoded Cell Sample QC Median umi Per Cell	Barcoded Cell Sample QC Unique Reads in Cells Mapped to Gene
Barcoded Cell Sample QC Fraction of Unique Reads in Cells	Barcoded Cell Sample QC Mean Reads per Cell	Barcoded Cell Sample QC Median Reads per Cell	Barcoded Cell Sample QC Mean Gene per Cell
Barcoded Cell Sample QC Median Gene per Cell	Barcoded Cell Sample QC Total Genes Unique Detected	Barcoded Cell Sample QC Percent Target	Barcoded Cell Sample QC Percent Intronic Reads
Barcoded Cell Sample QC Keeper Mean Reads per Cell	Barcoded Cell Sample QC Keeper Median Genes	Barcoded Cell Sample QC Keeper Cells	Barcoded Cell Sample QC Percent Keeper
Barcoded Cell Sample QC Percent Usable	Barcoded Cell Sample QC Frac TSO	Barcoded Cell Sample QC Percent Doublets	Barcoded Cell Sample QC Sequenced Reads
Barcoded Cell Sample QC Sequenced Read Pairs	Barcoded Cell Sample QC Fraction Valid Barcode	Barcoded Cell Sample QC Fraction Q30 Bases in Read 1	Barcoded Cell Sample QC Fraction Q30 Bases in Read 2
Barcoded Cell Sample QC Number of Cells	Barcoded Cell Sample QC Mean Raw Read Pairs per Cell	Barcoded Cell Sample QC Median High-Quality Fragments per Cell	Barcoded Cell Sample QC Fraction of High-Quality Fragments in Cells
Barcoded Cell Sample QC Fraction of Transposition Events in Peaks in Cells	Barcoded Cell Sample QC Fraction Duplicates	Barcoded Cell Sample QC Fraction Confidently Mapped	Barcoded Cell Sample QC Fraction Unmapped
Barcoded Cell Sample QC Fraction Nonnuclear	Barcoded Cell Sample QC Fraction Fragment in Nucleosome Free Region	Barcoded Cell Sample QC Fraction Fragment Flanking Single Nucleosome	Barcoded Cell Sample QC Tss Enrichment Score
Barcoded Cell Sample QC Fraction of High-Quality Fragments Overlapping Tss	Barcoded Cell Sample QC Number of Peaks	Barcoded Cell Sample QC Fraction of Genome in Peaks	Barcoded Cell Sample QC Fraction of High-Quality Fragments Overlapping Peaks
Barcoded Cell Sample QC ATAC Percent Target	Barcoded Cell Sample Alignment QC Job ID	Barcoded Cell Sample Alignment QC Status	Barcoded Cell Sample Alignment QC Status

Amplified cDNA Local Name / Identifier	Amplified CDNA NHash ID	Amplified cDNA Preparation Date	Amplified cDNA Amplified Quantity Ng
Amplified cDNA PCR Cycles	Amplified cDNA RNA Amplification Pass-Fail	Amplified cDNA Percent CDNA Longer Than 400bp	cDNA Amplification Set
Amplified cDNA Project	Amplified cDNA Lab

Local Library Name	Library NHash ID	Library Technique	R1/R2 Index
Library Preparation Date	Additional Comments	Library Source Type	Library Avg Size Bp
Library Concentration Nm	Library Input Ng	Library Prep Pass-Fail	Library Prep Set
Library Quantification FMOL	Library Quantification NG	Library Project	Library Lab

FASTQ File Alignment Status	Library Aliquot Local Name	Library Aliquot NHash ID	Sequencing Result Date
Library Aliquot Sequencing Result Status	FASTQ File Alignment Comments	Library Aliquot GEX QC Number of Reads	Library Aliquot GEX QC Sequencing Saturation
Library Aliquot GEX QC Fraction of Unique Reads Mapped to Genome	Library Aliquot GEX QC Fraction of Unique and Multiple Reads Mapped to Genome	Library Aliquot GEX QC Fraction of Reads with Q30 Bases in RNA	Library Aliquot GEX QC Fraction of Reads with Q30 Bases in cb And umi
Library Aliquot GEX QC Fraction of Reads with Valid Barcodes	Library Aliquot GEX QC Reads Mapped Antisense to Gene	Library Aliquot GEX QC Reads Mapped Confidently Exonic	Library Aliquot GEX QC Reads Mapped Confidently to Genome
Library Aliquot GEX QC Reads Mapped Confidently to Intronic Regions	Library Aliquot GEX QC Reads Mapped Confidently to Transcriptome	Library Aliquot GEX QC Estimated Cells	Library Aliquot GEX QC umis in Cells
Library Aliquot GEX QC Mean umi Per Cell	Library Aliquot GEX QC Median umi Per Cell	Library Aliquot GEX QC Unique Reads in Cells Mapped to Gene	Library Aliquot GEX QC Fraction of Unique Reads in Cells
Library Aliquot GEX QC Mean Reads per Cell	Library Aliquot GEX QC Median Reads per Cell	Library Aliquot GEX QC Mean Gene per Cell	Library Aliquot GEX QC Median Gene per Cell
Library Aliquot GEX QC Total Genes Unique Detected	Library Aliquot GEX QC Percent Target	Library Aliquot GEX QC Percent Intronic Reads	Library Aliquot GEX QC Keeper Mean Reads per Cell
Library Aliquot GEX QC Keeper Median Genes	Library Aliquot GEX QC Keeper Cells	Library Aliquot GEX QC Percent Keeper	Library Aliquot GEX QC Percent Usable
Library Aliquot GEX QC Frac TSO	Library Aliquot GEX QC Percent Doublets	Library Aliquot ATAC QC Sequenced Reads	Library Aliquot ATAC QC Sequenced Read Pairs
Library Aliquot ATAC QC Fraction Valid Barcode	Library Aliquot ATAC QC Fraction Q30 Bases in Read 1	Library Aliquot ATAC QC Fraction Q30 Bases in Read 2	Library Aliquot ATAC QC Number of Cells
Library Aliquot ATAC QC Mean Raw Read Pairs per Cell	Library Aliquot ATAC QC Median High-Quality Fragments per Cell	Library Aliquot ATAC QC Fraction of High-Quality Fragments in Cells	Library Aliquot ATAC QC Fraction of Transposition Events in Peaks in Cells
Library Aliquot ATAC QC Fraction Duplicates	Library Aliquot ATAC QC Fraction Confidently Mapped	Library Aliquot ATAC QC Fraction Unmapped	Library Aliquot ATAC QC Fraction Nonnuclear
Library Aliquot ATAC QC Fraction Fragment in Nucleosome Free Region	Library Aliquot ATAC QC Fraction Fragment Flanking Single Nucleosome	Library Aliquot ATAC QC Tss Enrichment Score	Library Aliquot ATAC QC Fraction of High-Quality Fragments Overlapping Tss
Library Aliquot ATAC QC Number of Peaks	Library Aliquot ATAC QC Fraction of Genome in Peaks	Library Aliquot ATAC QC Fraction of High-Quality Fragments Overlapping Peaks	Library Aliquot ATAC QC ATAC Percent Target
Library Aliquot FASTQ File Size in TB	Library Aliquot Project	Library Aliquot Lab	Alignment QC Status
NeMO Aliquot Fastq Public URL	NeMO Aliquot Fastq GCP URL	Library Aliquot Alignment QC Job ID	Library Aliquot QC Last Updated Date
Aliquot Alignment QC Uploaded Date	Library Aliquot QC Total Reads

Library Pool Local Name / Identifier	Library Pool NHash ID	Local Tube Name / Identifier	Library Pool Tube Barcode
Library Pool Preparation Date	Names of Aliquots for the Libraries	NHash Library IDs of the Aliquots in This Pool	Library Pool Sequencing Results Status
Sequencing Results Comments	Flowcell	Library Pool Alignment Status	Library Pool Sequencing Instrument
Library Pool Flowcell Type	Library Pool FASTQ Submission ID	Library Pool Projects	Library Pool Labs
Nemo Pool Bucket

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