BICAN Specimen Portal

Customized dashboards with source tables, selected columns, and management actions.
Dashboard Name	Source Table	Source Table Columns	Joined Columns	Actions
LibraryAliquot_NeMO_260422	Library Aliquot	22 columns FASTQ File Alignment Status Library Aliquot Local Name Library Aliquot NHash ID Sequencing Result Date Library Aliquot GEX QC Median umi Per Cell Library Aliquot GEX QC Median Reads per Cell Library Aliquot GEX QC Keeper Median Genes Library Aliquot GEX QC Keeper Cells Library Aliquot GEX QC Percent Usable Library Aliquot GEX QC Percent Doublets Library Aliquot ATAC QC Number of Cells Library Aliquot ATAC QC Mean Raw Read Pairs per Cell Library Aliquot ATAC QC Fraction of High-Quality Fragments in Cells Library Aliquot ATAC QC Tss Enrichment Score Library Aliquot Project Library Aliquot Lab Alignment QC Status NeMO Aliquot Fastq Public URL NeMO Aliquot Fastq GCP URL Library Aliquot Alignment QC Job ID Library Aliquot QC Last Updated Date Aliquot Alignment QC Uploaded Date	26 columns · 8 resources Donor 6 NHash Donor ID Sex at Birth Age at Death Value Age at Death Unit Age at Death Reference Point Donor Species Tissue 3 Tissue NHash ID Tissue Sample Structure Tissue Structure Acronym Dissociated Cell Sample 1 Dissociated Cell Sample NHash ID Enriched Cell Sample 3 Enriched Cell Sample NHash ID Enriched Cell Sample Cell Label Barcode Enrichment Population Barcoded Cell Sample 7 Barcoded Cell Sample NHash ID Barcoded Cell Sample Number of Expected Cells Barcoded Cell Sample Technique Barcoded Cell Sample Tag Barcoded Cell Sample QC Keeper Cells Barcoded Cell Sample Alignment QC Job ID Barcoded Cell Sample Alignment QC Status Amplified cDNA 1 Amplified CDNA NHash ID Library 2 Library NHash ID Library Technique Library Pool 3 Library Pool NHash ID Library Pool FASTQ Submission ID Nemo Pool Bucket	View Edit
BarcodedCellSample_Browse	Barcoded Cell Sample	16 columns Barcoded Cell Sample NHash ID Barcoded Cell Sample Number of Expected Cells Barcoded Cell Sample Technique Barcoded Cell Sample Tag Barcoded Cell Sample Project Barcoded Cell Sample Lab Barcoded Cell Sample QC Estimated Cells Barcoded Cell Sample QC Median umi Per Cell Barcoded Cell Sample QC Keeper Mean Reads per Cell Barcoded Cell Sample QC Keeper Median Genes Barcoded Cell Sample QC Keeper Cells Barcoded Cell Sample QC Percent Usable Barcoded Cell Sample QC Tss Enrichment Score Barcoded Cell Sample QC Fraction of High-Quality Fragments Overlapping Tss Barcoded Cell Sample Alignment QC Job ID Barcoded Cell Sample Alignment QC Status	26 columns · 7 resources Donor 7 NHash Donor ID Sex at Birth Age Value (Years) Age at Death Value Age at Death Unit Age at Death Reference Point Donor Species Tissue 3 Tissue NHash ID Tissue Sample Structure Tissue Structure Acronym Dissociated Cell Sample 1 Dissociated Cell Sample NHash ID Enriched Cell Sample 3 Enriched Cell Sample NHash ID Enriched Cell Sample Cell Label Barcode Enrichment Population Library 2 Library NHash ID Library Technique Library Aliquot 9 FASTQ File Alignment Status Library Aliquot Local Name Library Aliquot NHash ID Library Aliquot GEX QC Keeper Cells Alignment QC Status NeMO Aliquot Fastq Public URL Library Aliquot Alignment QC Job ID Library Aliquot QC Last Updated Date Aliquot Alignment QC Uploaded Date Library Pool 1 Library Pool NHash ID	View Edit
Section_browse	Section	8 columns Section Ordinal Section Thickness Section Barcode Plane of Section Section Usage Section NHash ID Section Project Section Lab	16 columns · 4 resources Donor 3 NHash Donor ID Sex at Birth Donor Species Slab 2 NHash Slab ID Slab Project ROI 2 ROI NHash ID ROI Type Tissue 9 Tissue NHash ID Species That the Tissue Belongs To Tissue Sample Structure Brain Subdivision the Tissue Belongs To Brain Hemisphere the Tissue Belongs To Tissue Sample Type Tissue Structure Acronym Tissue Project Tissue Lab	View Edit
bcs_metadata	Barcoded Cell Sample	64 columns Barcoded Cell Sample NHash ID Barcoded Cell Sample Number of Expected Cells Barcoded Cell Sample Port Well Barcoded Cell Input Quantity Count Barcoded Cell Sample Technique Barcoded Cell Sample Tag Barcoded Cell Sample Project Barcoded Cell Sample Lab Barcoded Cell Sample QC Number of Reads Barcoded Cell Sample QC Sequencing Saturation Barcoded Cell Sample QC Fraction of Unique Reads Mapped to Genome Barcoded Cell Sample QC Fraction of Unique and Multiple Reads Mapped to Genome Barcoded Cell Sample QC Fraction of Reads with Q30 Bases in RNA Barcoded Cell Sample QC Fraction of Reads with Q30 Bases in cb And umi Barcoded Cell Sample QC Fraction of Reads with Valid Barcodes Barcoded Cell Sample QC Reads Mapped Antisense to Gene Barcoded Cell Sample QC Reads Mapped Confidently Exonic Barcoded Cell Sample QC Reads Mapped Confidently to Genome Barcoded Cell Sample QC Reads Mapped Confidently to Intronic Regions Barcoded Cell Sample QC Reads Mapped Confidently to Transcriptome Barcoded Cell Sample QC Estimated Cells Barcoded Cell Sample QC umis in Cells Barcoded Cell Sample QC Mean umi Per Cell Barcoded Cell Sample QC Median umi Per Cell Barcoded Cell Sample QC Unique Reads in Cells Mapped to Gene Barcoded Cell Sample QC Fraction of Unique Reads in Cells Barcoded Cell Sample QC Mean Reads per Cell Barcoded Cell Sample QC Median Reads per Cell Barcoded Cell Sample QC Mean Gene per Cell Barcoded Cell Sample QC Median Gene per Cell Barcoded Cell Sample QC Total Genes Unique Detected Barcoded Cell Sample QC Percent Target Barcoded Cell Sample QC Percent Intronic Reads Barcoded Cell Sample QC Keeper Mean Reads per Cell Barcoded Cell Sample QC Keeper Median Genes Barcoded Cell Sample QC Keeper Cells Barcoded Cell Sample QC Percent Keeper Barcoded Cell Sample QC Percent Usable Barcoded Cell Sample QC Frac TSO Barcoded Cell Sample QC Percent Doublets Barcoded Cell Sample QC Sequenced Reads Barcoded Cell Sample QC Sequenced Read Pairs Barcoded Cell Sample QC Fraction Valid Barcode Barcoded Cell Sample QC Fraction Q30 Bases in Read 1 Barcoded Cell Sample QC Fraction Q30 Bases in Read 2 Barcoded Cell Sample QC Number of Cells Barcoded Cell Sample QC Mean Raw Read Pairs per Cell Barcoded Cell Sample QC Median High-Quality Fragments per Cell Barcoded Cell Sample QC Fraction of High-Quality Fragments in Cells Barcoded Cell Sample QC Fraction of Transposition Events in Peaks in Cells Barcoded Cell Sample QC Fraction Duplicates Barcoded Cell Sample QC Fraction Confidently Mapped Barcoded Cell Sample QC Fraction Unmapped Barcoded Cell Sample QC Fraction Nonnuclear Barcoded Cell Sample QC Fraction Fragment in Nucleosome Free Region Barcoded Cell Sample QC Fraction Fragment Flanking Single Nucleosome Barcoded Cell Sample QC Tss Enrichment Score Barcoded Cell Sample QC Fraction of High-Quality Fragments Overlapping Tss Barcoded Cell Sample QC Number of Peaks Barcoded Cell Sample QC Fraction of Genome in Peaks Barcoded Cell Sample QC Fraction of High-Quality Fragments Overlapping Peaks Barcoded Cell Sample QC ATAC Percent Target Barcoded Cell Sample Alignment QC Job ID Barcoded Cell Sample Alignment QC Status	None selected	View Edit
aliquot_metadata	Library Aliquot	69 columns FASTQ File Alignment Status Library Aliquot Local Name Library Aliquot NHash ID Sequencing Result Date Library Aliquot Sequencing Result Status Library Aliquot GEX QC Number of Reads Library Aliquot GEX QC Sequencing Saturation Library Aliquot GEX QC Fraction of Unique Reads Mapped to Genome Library Aliquot GEX QC Fraction of Unique and Multiple Reads Mapped to Genome Library Aliquot GEX QC Fraction of Reads with Q30 Bases in RNA Library Aliquot GEX QC Fraction of Reads with Q30 Bases in cb And umi Library Aliquot GEX QC Fraction of Reads with Valid Barcodes Library Aliquot GEX QC Reads Mapped Antisense to Gene Library Aliquot GEX QC Reads Mapped Confidently Exonic Library Aliquot GEX QC Reads Mapped Confidently to Genome Library Aliquot GEX QC Reads Mapped Confidently to Intronic Regions Library Aliquot GEX QC Reads Mapped Confidently to Transcriptome Library Aliquot GEX QC Estimated Cells Library Aliquot GEX QC umis in Cells Library Aliquot GEX QC Mean umi Per Cell Library Aliquot GEX QC Median umi Per Cell Library Aliquot GEX QC Unique Reads in Cells Mapped to Gene Library Aliquot GEX QC Fraction of Unique Reads in Cells Library Aliquot GEX QC Mean Reads per Cell Library Aliquot GEX QC Median Reads per Cell Library Aliquot GEX QC Mean Gene per Cell Library Aliquot GEX QC Median Gene per Cell Library Aliquot GEX QC Total Genes Unique Detected Library Aliquot GEX QC Percent Target Library Aliquot GEX QC Percent Intronic Reads Library Aliquot GEX QC Keeper Mean Reads per Cell Library Aliquot GEX QC Keeper Median Genes Library Aliquot GEX QC Keeper Cells Library Aliquot GEX QC Percent Keeper Library Aliquot GEX QC Percent Usable Library Aliquot GEX QC Frac TSO Library Aliquot GEX QC Percent Doublets Library Aliquot ATAC QC Sequenced Reads Library Aliquot ATAC QC Sequenced Read Pairs Library Aliquot ATAC QC Fraction Valid Barcode Library Aliquot ATAC QC Fraction Q30 Bases in Read 1 Library Aliquot ATAC QC Fraction Q30 Bases in Read 2 Library Aliquot ATAC QC Number of Cells Library Aliquot ATAC QC Mean Raw Read Pairs per Cell Library Aliquot ATAC QC Median High-Quality Fragments per Cell Library Aliquot ATAC QC Fraction of High-Quality Fragments in Cells Library Aliquot ATAC QC Fraction of Transposition Events in Peaks in Cells Library Aliquot ATAC QC Fraction Duplicates Library Aliquot ATAC QC Fraction Confidently Mapped Library Aliquot ATAC QC Fraction Unmapped Library Aliquot ATAC QC Fraction Nonnuclear Library Aliquot ATAC QC Fraction Fragment in Nucleosome Free Region Library Aliquot ATAC QC Fraction Fragment Flanking Single Nucleosome Library Aliquot ATAC QC Tss Enrichment Score Library Aliquot ATAC QC Fraction of High-Quality Fragments Overlapping Tss Library Aliquot ATAC QC Number of Peaks Library Aliquot ATAC QC Fraction of Genome in Peaks Library Aliquot ATAC QC Fraction of High-Quality Fragments Overlapping Peaks Library Aliquot ATAC QC ATAC Percent Target Library Aliquot FASTQ File Size in TB Library Aliquot Project Library Aliquot Lab Alignment QC Status NeMO Aliquot Fastq Public URL NeMO Aliquot Fastq GCP URL Library Aliquot Alignment QC Job ID Library Aliquot QC Last Updated Date Aliquot Alignment QC Uploaded Date Library Aliquot QC Total Reads	None selected	View Edit
Donor_select-metadata	Donor	20 columns NHash Donor ID Donor Source Sex at Birth Age at Death Value Age at Death Unit Age at Death Reference Point Age at Death Description Donor Species Access Level Data Use Limitation Disease Specification IRB Approval Required Publication Required Collaboration Required Not-for-profit Use Only Methods Genetic Study Only Genomic Summary Results (GSR) Controlled Access Donor Project Donor Labs	None selected	View Edit
bcs-tissue-aliquot	Barcoded Cell Sample	2 columns Barcoded Cell Sample NHash ID Barcoded Cell Sample Number of Expected Cells	3 columns · 2 resources Tissue 1 Tissue NHash ID Library Aliquot 2 Library Aliquot Local Name Library Aliquot NHash ID	View Edit
NeMO-HMBA-source	Library Aliquot	69 columns FASTQ File Alignment Status Library Aliquot Local Name Library Aliquot NHash ID Sequencing Result Date Library Aliquot Sequencing Result Status Library Aliquot GEX QC Number of Reads Library Aliquot GEX QC Sequencing Saturation Library Aliquot GEX QC Fraction of Unique Reads Mapped to Genome Library Aliquot GEX QC Fraction of Unique and Multiple Reads Mapped to Genome Library Aliquot GEX QC Fraction of Reads with Q30 Bases in RNA Library Aliquot GEX QC Fraction of Reads with Q30 Bases in cb And umi Library Aliquot GEX QC Fraction of Reads with Valid Barcodes Library Aliquot GEX QC Reads Mapped Antisense to Gene Library Aliquot GEX QC Reads Mapped Confidently Exonic Library Aliquot GEX QC Reads Mapped Confidently to Genome Library Aliquot GEX QC Reads Mapped Confidently to Intronic Regions Library Aliquot GEX QC Reads Mapped Confidently to Transcriptome Library Aliquot GEX QC Estimated Cells Library Aliquot GEX QC umis in Cells Library Aliquot GEX QC Mean umi Per Cell Library Aliquot GEX QC Median umi Per Cell Library Aliquot GEX QC Unique Reads in Cells Mapped to Gene Library Aliquot GEX QC Fraction of Unique Reads in Cells Library Aliquot GEX QC Mean Reads per Cell Library Aliquot GEX QC Median Reads per Cell Library Aliquot GEX QC Mean Gene per Cell Library Aliquot GEX QC Median Gene per Cell Library Aliquot GEX QC Total Genes Unique Detected Library Aliquot GEX QC Percent Target Library Aliquot GEX QC Percent Intronic Reads Library Aliquot GEX QC Keeper Mean Reads per Cell Library Aliquot GEX QC Keeper Median Genes Library Aliquot GEX QC Keeper Cells Library Aliquot GEX QC Percent Keeper Library Aliquot GEX QC Percent Usable Library Aliquot GEX QC Frac TSO Library Aliquot GEX QC Percent Doublets Library Aliquot ATAC QC Sequenced Reads Library Aliquot ATAC QC Sequenced Read Pairs Library Aliquot ATAC QC Fraction Valid Barcode Library Aliquot ATAC QC Fraction Q30 Bases in Read 1 Library Aliquot ATAC QC Fraction Q30 Bases in Read 2 Library Aliquot ATAC QC Number of Cells Library Aliquot ATAC QC Mean Raw Read Pairs per Cell Library Aliquot ATAC QC Median High-Quality Fragments per Cell Library Aliquot ATAC QC Fraction of High-Quality Fragments in Cells Library Aliquot ATAC QC Fraction of Transposition Events in Peaks in Cells Library Aliquot ATAC QC Fraction Duplicates Library Aliquot ATAC QC Fraction Confidently Mapped Library Aliquot ATAC QC Fraction Unmapped Library Aliquot ATAC QC Fraction Nonnuclear Library Aliquot ATAC QC Fraction Fragment in Nucleosome Free Region Library Aliquot ATAC QC Fraction Fragment Flanking Single Nucleosome Library Aliquot ATAC QC Tss Enrichment Score Library Aliquot ATAC QC Fraction of High-Quality Fragments Overlapping Tss Library Aliquot ATAC QC Number of Peaks Library Aliquot ATAC QC Fraction of Genome in Peaks Library Aliquot ATAC QC Fraction of High-Quality Fragments Overlapping Peaks Library Aliquot ATAC QC ATAC Percent Target Library Aliquot FASTQ File Size in TB Library Aliquot Project Library Aliquot Lab Alignment QC Status NeMO Aliquot Fastq Public URL NeMO Aliquot Fastq GCP URL Library Aliquot Alignment QC Job ID Library Aliquot QC Last Updated Date Aliquot Alignment QC Uploaded Date Library Aliquot QC Total Reads	32 columns · 7 resources Donor 8 NHash Donor ID Ethnicity Sex at Birth Age at Death Value Age at Death Unit Donor Species RIN Developmental ROI 2 ROI NHash ID ROI Type Tissue 6 Tissue NHash ID Tissue Sample Structure Brain Subdivision the Tissue Belongs To Brain Hemisphere the Tissue Belongs To Tissue Sample Type Tissue Structure Acronym Dissociated Cell Sample 1 Cell Prep Type Barcoded Cell Sample 5 Barcoded Cell Sample NHash ID Barcoded Cell Sample Technique Barcoded Cell Sample Project Barcoded Cell Sample Alignment QC Job ID Barcoded Cell Sample Alignment QC Status Library 8 Library NHash ID Library Technique Library Avg Size Bp Library Concentration Nm Library Input Ng Library Prep Pass-Fail Library Quantification FMOL Library Quantification NG Library Pool 2 Library Pool NHash ID Nemo Pool Bucket	View Edit
testo	Donor	1 column NHash Donor ID	2 columns · 2 resources Library Aliquot 1 FASTQ File Alignment Status Library Pool 1 Library Pool NHash ID	View Edit
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